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Comment: [Original edit by JustinMason] make this a bit more forceful

I'm having trouble with SpamAssassin and amavisd-new.

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Your first port of call -- even before reading the SpamAssassin [FrequentlyAskedQuestions] list -- should be \[
Have you checked the amavisd FAQ page regarding spam-scanners at
http://www.ijs.si/software/amavisd/#faq-spam
? Your question might also be answered there..
 the amavisd FAQ list\].

Amavisd intercepts configuration settings, so a lot of the SpamAssassin documented ways to set configuration work slightly differently under amavisd. It's very important that you understand what amavisd does in these case, so be sure to read that product's documentation and FAQ before asking questions about SA.