...
next, carry on with other steps from RescoreMassCheck (if that's what you're doing).
PGAPack
To get garescorer to build with the above "make > make.out 2>&1" command on an Ubuntu Maverick machine, I installed the libpgapack-serial1 package, and ran:
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mkdir -p /local/pgapack-1.0.0.1/lib
ln -s /usr/lib /local/pgapack-1.0.0.1/lib/sun4
mkdir -p /local/pgapack-1.0.0.1
ln -s /usr/include/pgapack-serial /local/pgapack-1.0.0.1/include
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The first symptom you are likely to see of this problem is the error:
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time: cannot run ./garescorer: No such file or directory
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